Maria Mircea

Publications

Publications

Publications and preprints.

  1. 2026

    From brown to white: Brown adipose tissue endothelial cells whiten in culture conditions

    Tabea Elschner, Stephan Grein, Jana Sander, Staffan Hildebrand, Lara Heubach, Nina Pannwitz, Maria Mircea et al.

    Molecular Metabolism 107:102349. doi.org/10.1016/j.molmet.2026.102349

    • Biomedical Data
    • Mechanistic Understanding
  2. 2025

    Tissue microenvironment dictates the state of human iPSC-derived endothelial cells of distinct developmental origin in 3D cardiac microtissues

    Xu Cao, Maria Mircea, Sara Cascione, Atoosa Amel, Theano Tsikari, Francijna E van den Hil, Hailiang Mei, Katrin Neumann, Anna Alemany, Konstantinos Anastassiadis, Christine L Mummery, Stefan Semrau, Valeria V Orlova

    iScience 28(10). doi.org/10.1016/j.isci.2025.113611

    • Biomedical Data
    • Mechanistic Understanding
  3. 2024

    The shapes of elongating gastruloids are consistent with convergent extension

    Martijn A de Jong, Esmée Adegeest, Noémie MLP Bérenger-Currias, Maria Mircea et al.

    PLOS Computational Biology. doi.org/10.1371/journal.pcbi.1011825

    • Biomedical Data
    • Mechanistic Understanding
  4. 2024

    Inference of dynamical gene regulatory networks from single-cell data with physics informed neural networks

    Maria Mircea, Diego Garlaschelli, Stefan Semrau

    bioRxiv. arXiv:2401.07379

    • Machine Learning
    • Biomedical Data
    • Mechanistic Understanding
  5. 2022

    ETV2 Upregulation Marks the Specification of Early Cardiomyocytes and Endothelial Cells

    Xu Cao, Maria Mircea et al.

    Stem Cells. doi.org/10.1093/stmcls/sxac086

    • Biomedical Data
    • Mechanistic Understanding
  6. 2022

    A gastruloid model of embryonic and extra-embryonic cell type interaction

    Noémie Bérenger-Currias, Maria Mircea et al.

    Journal of Tissue Engineering. doi.org/10.1177/20417314221103042

    • Biomedical Data
    • Mechanistic Understanding
  7. 2021

    Phiclust: a clusterability measure for single-cell transcriptomics reveals phenotypic subpopulations

    Maria Mircea, Mazène Hochane, Xueying Fan, Susana M. Chuva De Sousa Lopes, Diego Garlaschelli, Stefan Semrau

    Genome Biology. doi.org/10.1186/s13059-021-02590-x

    • Machine Learning
    • Biomedical Data
  8. 2021

    How a cell decides its own fate

    Maria Mircea, Stefan Semrau

    Biochemical Society Transactions. doi.org/10.1042/BST20210135

    • Mechanistic Understanding
  9. 2020

    Human-iPSC-Derived Cardiac Stromal Cells Enhance Maturation in 3D Cardiac Microtissues

    Elisa Giacomelli, Viviana Meraviglia, Giulia Campostrini, Amy Cochrane, Xu Cao, Ruben W.J. van Helden, Ana Krotenberg Garcia, Maria Mircea et al.

    Cell Stem Cell 26:862-879. doi.org/10.1016/j.stem.2020.05.004

    • Biomedical Data
    • Mechanistic Understanding
  10. 2019

    Single-cell RNA-seq denoising using a deep count autoencoder

    Gökcen Eraslan, Lukas M. Simon, Maria Mircea, Nikola S. Mueller, Fabian J. Theis

    Nature Communications 10:390. doi.org/10.1038/s41467-018-07931-2

    • Machine Learning
    • Biomedical Data
  11. 2018

    Galois lattice and positional dominance

    Maria Mircea, Jürgen Pfeffer

    Statistica Applicata - Italian Journal of Applied Statistics 11-31. Google Scholar

    • Machine Learning